PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012559-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 212aa MW: 23712.9 Da PI: 10.392

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012559-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.8	3.3e-07	152	186	4	41
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKa 41 +h+ +Er RR+ri +++ L+ l+P + ++ K +K SMil_00012559-RA_Salv 152 SHSLAERVRRERISERMKLLQALVPGC---DKVKFNKF 186 8*************************9...99998885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.28E-4	146	182	No hit	No description
SuperFamily	SSF47459	9.03E-10	146	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.693	148	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-8	151	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-4	152	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MAAFSSSFQH LDASSSSVFL SRPNSSSSSS PSTTINSMCA LFHDPNNALS HQFHHLHHGT 60 TPSSSNNNIN DSAPLNAAAA TNKNSMDSSI SVVTHKNRQT KKRKSNSAQS KDMRELVKGK 120 KQKKVKDCEE KKEGEEKGYI HVRARRGQAT DSHSLAERVR RERISERMKL LQALVPGCDK 180 VKFNKFVLIS LSICFTHTHI YIYVCIYMSL LF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257447	0.0	KP257447.1 Salvia miltiorrhiza clone 14 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022889922.1	5e-36	transcription factor bHLH137-like
TrEMBL	A0A0H3YB18	1e-126	A0A0H3YB18_SALMI; Basic helix-loop-helix transcription factor

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-22	bHLH family protein