PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012569-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 411aa    MW: 46535.1 Da    PI: 7.2123
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012569-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind76.25.8e-2448106260
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                            Fl+k+y++ +d++l+++isw+e+g+sfvv+d+ efa+ vLp+ Fkh+nf+SFvRQLn+Y
  SMil_00012569-RA_Salv  48 FLSKTYDLTDDPSLDSIISWEEKGKSFVVWDPVEFARLVLPRNFKHNNFSSFVRQLNTY 106
                            9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-4044197IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-3146121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.54E-2346106IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-2648197IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-124871IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-128698IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1299111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-31165197IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGAHNIQTPL HRRFSTSTEP ESLPLRPPPS VASFDSPRPL ASPPIPRFLS KTYDLTDDPS  60
LDSIISWEEK GKSFVVWDPV EFARLVLPRN FKHNNFSSFV RQLNTYVGIV TGIIFSLFVR  120
IHYCMFHLAI VYVRFSGDVP IVFKSMLGRS KLICVVKFNY GCIYVQGFRK IDTDKWEFTN  180
GGFVRGQRHL LKTIQRRKSH NPQQQQQQLE GSSNALEGDI KELRRERRLM MEEVMGLQHE  240
QRCTVQHMGV VEEKLEAAET RHKQMISFLA TMLHSQTIPS SSRTMRRFVK HQPQLCNSDP  300
PSLDAQDLIL YTADKGDSVA MNPADQRPIS SPQNVVVENG VPGFLIAEDA GLEAGHPWEG  360
YVSDYDAPHL GVGGEFLDGL GSMQLQGSSG IKNWLDEESP VNYIYMDPSI K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-15391061887Heat shock factor protein 1
5d5v_B1e-15391061887Heat shock factor protein 1
5d5v_D1e-15391061887Heat shock factor protein 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9BB981e-106A0A4D9BB98_SALSN; Heat shock transcription factor, other eukaryote
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-44heat shock transcription factor A3