PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012607-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

YABBY

Protein Properties

Length: 215aa MW: 24442.9 Da PI: 9.3112

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012607-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	199.1	1.9e-61	31	187	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 +eq+Cy+ CnfC+ ilavsvP + l+ vvtvrCGhC++l svn+a a + l +s ld ++ + e +v++ + ++ +++++ + SMil_00012607-RA_Salv 31 IVAEQMCYIPCNFCSIILAVSVPCKNLLDVVTVRCGHCANLWSVNMAAAFHSLHPSS-LDAQVGNYASSEYRVDGGSSSKWNHSHRIP 117 5789******************************************999998777.899999988888888877665544443333 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + s + p+++ v+rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl SMil_00012607-RA_Salv 118 IQPPSF---IT-----KPNQKIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 187 332222...22.....23333479**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.2E-67	33	187	IPR006780	YABBY protein
SuperFamily	SSF47095	2.75E-8	122	180	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.8E-4	134	181	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
LLCLITSSNI YILPSSRERK RDNILLTKME IVAEQMCYIP CNFCSIILAV SVPCKNLLDV 60 VTVRCGHCAN LWSVNMAAAF HSLHPSSLDA QVGNYASSEY RVDGGSSSKW NHSHRIPIQP 120 PSFITKPNQK IVNRPPEKRQ RVPSAYNQFI KEEIQRIKAN NPDITHREAF STAAKNWAHF 180 PHIHFGLMLE SNNEAKHDDQ NSDKHQMRRS AVLNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078402.1	3e-94	axial regulator YABBY 5
Swissprot	Q8GW46	2e-77	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0X9PYC4	1e-100	A0A0X9PYC4_MENSP; YABBY family protein 5
STRING	Migut.K00443.1.p	2e-88	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	7e-80	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]