PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012640-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 331aa MW: 37407.9 Da PI: 7.2029

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012640-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.2	1.3e-52	15	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 + pGfrFhPtdeelv +yL++kv++k+l++ e ik++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+ SMil_00012640-RA_Salv 15 MLPGFRFHPTDEELVGFYLRRKVQHKPLSI-ELIKQLDIYKYDPWDLPKMASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGT 101 579*************************.89***********9889999***************************** PP NAM 89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s+ + + +glkk+Lvfy+gra +g+ktdW+mhe+rl SMil_00012640-RA_Salv 102 DRPIYSSdggGAKCIGLKKSLVFYRGRAARGTKTDWMMHEFRL 144 **98766677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-58	13	171	IPR003441	NAC domain
PROSITE profile	PS51005	57.01	15	171	IPR003441	NAC domain
Pfam	PF02365	7.9E-26	17	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEQERIESDD NAEVMLPGFR FHPTDEELVG FYLRRKVQHK PLSIELIKQL DIYKYDPWDL 60 PKMASTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG GGAKCIGLKK 120 SLVFYRGRAA RGTKTDWMMH EFRLPSASPK KYLDKIIPAH EAWAICRIFK KASSSAQRAL 180 SLSQSWISPL SDDTTMSFCN DLQPSSFSHL NHQWPSNGMQ QNAIFSAPRD ETTSFHDHEQ 240 RAPKISTNDA SSLLLEMSTS VLGDAGFRRL PEPSDGAAAA ENGGGVNDEE WGMMIRYPSY 300 GFALSSNLVW EYSSPCPSEL STAYSTNNCY T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-55	7	177	8	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-55	7	177	8	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-55	7	177	8	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-55	7	177	8	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-55	7	177	11	174	NAC domain-containing protein 19
3swm_B	9e-55	7	177	11	174	NAC domain-containing protein 19
3swm_C	9e-55	7	177	11	174	NAC domain-containing protein 19
3swm_D	9e-55	7	177	11	174	NAC domain-containing protein 19
3swp_A	9e-55	7	177	11	174	NAC domain-containing protein 19
3swp_B	9e-55	7	177	11	174	NAC domain-containing protein 19
3swp_C	9e-55	7	177	11	174	NAC domain-containing protein 19
3swp_D	9e-55	7	177	11	174	NAC domain-containing protein 19
4dul_A	8e-55	7	177	8	171	NAC domain-containing protein 19
4dul_B	8e-55	7	177	8	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071000.1	1e-129	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	3e-94	FEZ_ARATH; Protein FEZ
TrEMBL	A0A022Q7D4	1e-127	A0A022Q7D4_ERYGU; Uncharacterized protein
STRING	Migut.E00095.1.p	1e-128	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-91	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]