PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012716-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 150aa    MW: 17092.4 Da    PI: 10.4943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012716-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.33e-211969155
                    AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa a+++a+++l+g
  SMil_00012716-RA_Salv 19 PQFRGVRKRP-WGRYAAEIRDpWK----KTRKWLGTFDTAEEAALAYDEAARSLRG 69
                           689*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-271976No hitNo description
PfamPF008471.3E-131969IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-222077IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-312076IPR001471AP2/ERF domain
SMARTSM003805.4E-332083IPR001471AP2/ERF domain
PROSITE profilePS5103221.6142077IPR001471AP2/ERF domain
PRINTSPR003673.5E-102132IPR001471AP2/ERF domain
PRINTSPR003673.5E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MVLENLSDDG AAAHAKQRPQ FRGVRKRPWG RYAAEIRDPW KKTRKWLGTF DTAEEAALAY  60
DEAARSLRGP KAKTNFVYGE ALPPPNFNAS FWRSPRFFRS AGDASAPPRS EYKGYKMEEV  120
GAVVISEKEK RIRSEKKPFL FDLNLPAPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-20876271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082648.15e-71ethylene-responsive transcription factor 14
TrEMBLA0A2G9HEF42e-70A0A2G9HEF4_9LAMI; Uncharacterized protein
STRINGMigut.N02188.1.p4e-61(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141361212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-22ERF domain protein 12