PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00012874-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

SRS

Protein Properties

Length: 412aa MW: 42425 Da PI: 8.4959

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012874-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	215.9	8.9e-67	197	356	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 +gt++CqdCGnqakkdC h+RCRtCCksrg+dC+th+kstWvpaa+rrerq la++ ++a +s++++ +k++r +++++++s+t+ SMil_00012874-RA_Salv 197 AGTTTCQDCGNQAKKDCPHRRCRTCCKSRGYDCTTHLKSTWVPAARRRERQL-LATSGATAGSSQSTSGTKKPRLGGASQTTTASHTS 283 6899*******************************************965.5556677888889999**9999***** PP DUF702 91 lssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +s+++++++++t+s lP +v+++avf+cvrv++vddge+++aYq++v+igGhvfkG+LydqG+e SMil_00012874-RA_Salv 284 TSNTTQTRSFDTTSshqdagfkesLPGQVRAPAVFKCVRVTAVDDGEDQYAYQAVVKIGGHVFKGFLYDQGVE 356 *******99999*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-61	199	356	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.6E-26	201	243	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.4E-30	308	355	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MEKKSCSPRT NTLVLSIRIV VSVATARRLP SDSGAFADWV ASSSASAGDL SLSFNAGPAG 60 GSAAPAAAGM WPSPARPHIN CGLPPEFFFV APASSFHHHP EAVTAASTIN FDPHSLNASS 120 AIGVIPLLTA APCMASDEDL FNRRGGGGGS GSGMQLWQHH QQGQNSPAYL IKPMTVEHPN 180 LLQSGGGGGG GASSSAAGTT TCQDCGNQAK KDCPHRRCRT CCKSRGYDCT THLKSTWVPA 240 ARRRERQLLA TSGATAGSSQ STSGTKKPRL GGASQTTTAS HTSTSNTTQT RSFDTTSSHQ 300 DAGFKESLPG QVRAPAVFKC VRVTAVDDGE DQYAYQAVVK IGGHVFKGFL YDQGVEGRDG 360 LPNLAELHLG GGRNGASSSP PPPVLDHASD IYGGTSGGGF LGGSTNYGNP IN

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MEKKSCSPRT NTLVLSIRIV VSVATARRLP SDSGAFADWV ASSSASAGDL SLSFNAGPAG  60
GSAAPAAAGM WPSPARPHIN CGLPPEFFFV APASSFHHHP EAVTAASTIN FDPHSLNASS  120
AIGVIPLLTA APCMASDEDL FNRRGGGGGS GSGMQLWQHH QQGQNSPAYL IKPMTVEHPN  180
LLQSGGGGGG GASSSAAGTT TCQDCGNQAK KDCPHRRCRT CCKSRGYDCT THLKSTWVPA  240
ARRRERQLLA TSGATAGSSQ STSGTKKPRL GGASQTTTAS HTSTSNTTQT RSFDTTSSHQ  300
DAGFKESLPG QVRAPAVFKC VRVTAVDDGE DQYAYQAVVK IGGHVFKGFL YDQGVEGRDG  360
LPNLAELHLG GGRNGASSSP PPPVLDHASD IYGGTSGGGF LGGSTNYGNP IN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012835509.1	1e-138	PREDICTED: uncharacterized protein LOC105956208
Refseq	XP_012838439.1	1e-139	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_020552557.1	1e-139	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	7e-74	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A4D9ASV1	1e-177	A0A4D9ASV1_SALSN; Uncharacterized protein
STRING	Migut.N02371.1.p	1e-140	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	1e-68	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]