PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012912-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 478aa    MW: 52541.4 Da    PI: 6.5978
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012912-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.4e-16302353155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  SMil_00012912-RA_Salv 302 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 353
                            57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.826206267IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-11218269IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-10220268IPR001471AP2/ERF domain
SMARTSM003808.1E-7220273IPR001471AP2/ERF domain
CDDcd000181.24E-11235269No hitNo description
CDDcd000182.70E-11302361No hitNo description
PfamPF008473.1E-10302353IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18302362IPR016177DNA-binding domain
PROSITE profilePS5103219.111303361IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-18303361IPR001471AP2/ERF domain
SMARTSM003807.9E-31303367IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MFAEADNQHQ VKEQQQHNAA IYTSYMQQPP PKLEDFFAGG GDSTETQDSS LTHIYDHHHA  60
DGGGAYFGGG EQQDLKSIIG FQAFSANSGS NVDDSAFAGQ TQSPVESATE LAAYSHCPVT  120
ATANGLSLDV NINNDNNKAV VSTDSDSCKK IADTFGQRTS IYRDIDGQED MKRIYGITAV  180
EERAKQEKGV KSGWIYHKGA RYRFCLFGGL TRCIAILHEP WSCWCCPKRE LYAAVYLGGY  240
DKEDKAARAY DLAALKYWGP TATTNFPISN YAKEVEEMKH MTKQEFIASL RRKSSGFSRG  300
ASIYRGVTRH HQQGRWQARI GRVAGNKDLY LGTFATEEEA AEAYDIAAIK FRGINAVTNF  360
EMNRYDVEAI AKSPLPIGGT AKRLKLSLEG EEKAGPLGSI LQTPCNSSGS SISFAAIQPS  420
SGIPCGVPLD NSTPFYHHNL FHHLYPNNPV ASDTSSSVSS MNLMPTPGEY FVWPHHTY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7844590.0KJ784459.1 Salvia miltiorrhiza AP8/EREBP Transcription Factors (WRI8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097469.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-110AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A4D8Z4J50.0A0A4D8Z4J5_SALSN; AP2-like factor, ANT lineage
STRINGMigut.N00586.1.p1e-156(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-108AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]