PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013026-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 173aa    MW: 18793.2 Da    PI: 8.6972
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013026-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.35.8e-34311232103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+++++ed++++++isws+  nsf+v+d+  ++  +Lpk+Fkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F  g
  SMil_00013026-RA_Salv  31 FLTKIFDMVEDSSTDSVISWSAARNSFIVWDPYALSAALLPKFFKHANFSSFVRQLNTYGFRKVDADR---------WEFANEGFLGG 109
                            9********************999*****************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            kk+ll++ikr++++
  SMil_00013026-RA_Salv 110 KKHLLKTIKRRRNA 123
                            ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-5327120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.3E-3528120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-3228120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-183154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.3E-3031120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEGAAVKVEV DGAAATPRPM ESLYDLGTPP FLTKIFDMVE DSSTDSVISW SAARNSFIVW  60
DPYALSAALL PKFFKHANFS SFVRQLNTYG FRKVDADRWE FANEGFLGGK KHLLKTIKRR  120
RNASQSSTCH QGGGGGGGGG GGGGAPCVEV GRYGKEEEVE RLKRDRDVLM AQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-242812026129Heat shock factor protein 1
5d5v_B2e-242812026129Heat shock factor protein 1
5d5v_D2e-242812026129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537779.11e-77PREDICTED: heat shock factor protein HSF30 isoform X2
SwissprotP411527e-77HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A1U8DRZ14e-76A0A1U8DRZ1_CAPAN; Heat shock factor protein HSF30
TrEMBLA0A1U8E1Z93e-76A0A1U8E1Z9_CAPAN; heat shock factor protein HSF30 isoform X2
TrEMBLA0A2G2YWS34e-76A0A2G2YWS3_CAPAN; heat shock factor protein HSF30 isoform X1
TrEMBLA0A2G3BRR54e-76A0A2G3BRR5_CAPCH; Heat shock factor protein HSF30
STRINGXP_004291051.18e-75(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-69heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]