PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013155-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 235aa    MW: 25298.6 Da    PI: 8.2997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013155-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001280102123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y+C+ C+ksFs+   L  H  +H
  SMil_00013155-RA_Salv  80 YQCKTCSKSFSSFQALGGHRASH 102
                            9***********99999998887 PP
2zf-C2H2110.0013156178123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++Cg  F +   L  H+r+H
  SMil_00013155-RA_Salv 156 HECSICGAEFGSGQALGGHMRRH 178
                            78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.17E-979102No hitNo description
PfamPF139125.4E-1279104IPR007087Zinc finger, C2H2
SMARTSM003550.04480102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.09780102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576673.17E-9151178No hitNo description
PfamPF139123.9E-13155180IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349156178IPR007087Zinc finger, C2H2
SMARTSM003550.026156178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MLQEVTMIKG KRSKRPRSAS PLALTIATSS ELSGGGGAVG DGVISDVSPS HSHDEEEEDM  60
ANCLILLAKG RSSQPAAEAY QCKTCSKSFS SFQALGGHRA SHKKPIKPEE KKPLMREKQE  120
RECFQLAERD DSTNLSLQIS NRSASSGSPQ SKTRVHECSI CGAEFGSGQA LGGHMRRHRP  180
IPAVASGGVK KARNLLSLDL NLPAPEDDQP ESKFPFATKE QVIVFAASPL IDCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077299.12e-93zinc finger protein ZAT5
SwissprotQ681X45e-49ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A4D9AIX11e-104A0A4D9AIX1_SALSN; Uncharacterized protein
STRINGXP_006493540.18e-70(Citrus sinensis)
STRINGXP_006428462.18e-70(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-46C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]