PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013181-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Protein Properties

Length: 222aa MW: 25167.8 Da PI: 9.8205

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013181-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.4	1.5e-14	124	213	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k +++s+v+ +l lp++f ++h + ++ + l de+ ++ e k+ k++ l++GW++F+ +++L +gD +vF+l++ + SMil_00013181-RA_Salv 124 FVKPMLQSHVTGGFWLGLPRHFSTTHL--PSRDAAINLVDENDQVSETKYLALKTG----LSGGWRGFAIDHELVDGDALVFQLIDPT 205 89*******************9994..346679***********666666....**********************9867 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +f +v ++r SMil_00013181-RA_Salv 206 TF--KVYIIR 213 77..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-19	115	214	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.85E-23	117	215	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.95E-24	122	213	No hit	No description
SMART	SM01019	8.7E-20	124	215	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.5E-13	124	213	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.293	124	215	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MVVGKKSAYE ETRQKRLEEN KKRMEELNLN KLAHALHTPK PSPMKKVKPK LPLDLSAVRR 60 SSRVAVMPPR SYKEVAVVEA MGKPRSYQRR DLLNRVYAGD EERQYAIQRA EDLQSSLDQD 120 IPTFVKPMLQ SHVTGGFWLG LPRHFSTTHL PSRDAAINLV DENDQVSETK YLALKTGLSG 180 GWRGFAIDHE LVDGDALVFQ LIDPTTFKVY IIRVNEPGDS SN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088274.1	1e-128	B3 domain-containing protein At3g19184 isoform X2
Swissprot	Q1G3M3	8e-81	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A4D9C1F3	1e-133	A0A4D9C1F3_SALSN; Uncharacterized protein
STRING	XP_009772546.1	1e-111	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-77	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]