PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013210-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 219aa MW: 24609.9 Da PI: 10.1235

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013210-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.1	7e-19	53	138	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +YneYA ++GF +r+ +s+ks+r+g+i++r + C + + +++ + +++ ++ r gC+a l vk+e+ g+w+v k++ +HnH+l SMil_00013210-RA_Salv 53 YYNEYAGRAGFLTRIISSRKSERDGSIVSRGLGCRNIPNIQKSGNI---SNEGGQKRRDGCTAILLVKRENGGRWVVRKFVRDHNHSL 137 8*******************************999888887766...6777888999**************************9 PP FAR1 90 a 90 + SMil_00013210-RA_Salv 138 V 138 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-16	53	138	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MLSVVVDVEA TPDGGNGLME ASVAGDFATC EAERNAEPYV GMVFETEAAA RAYYNEYAGR 60 AGFLTRIISS RKSERDGSIV SRGLGCRNIP NIQKSGNISN EGGQKRRDGC TAILLVKREN 120 GGRWVVRKFV RDHNHSLVAS LPKRRPTFDE KDKRIQELTA ELRVKKRLSA AYREQLLILM 180 KDVENHTDHL TSKVQMTRNN LKELEARRQQ LSNHNKPSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073899.1	1e-124	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_011073901.1	1e-124	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_020548482.1	1e-124	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
TrEMBL	A0A4D9BF32	1e-134	A0A4D9BF32_SALSN; Uncharacterized protein
STRING	Migut.N03107.1.p	1e-121	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13099	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-42	FAR1 family protein