PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013373-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 145aa MW: 16743.1 Da PI: 6.9388

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013373-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	103.3	2.1e-32	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCa+C++l+++C +dC+l pyfp+e++++f++vhk+FG +n++++++ ++e+er++a+++l+ eA++r++d v+Ga+gv ++l+ q SMil_00013373-RA_Salv 5 ACAVCRHLGKQCDEDCILGPYFPQERTQEFKYVHKVFGIHNLTQIVSCVEEHERPTAIETLIIEAKMRVHDKVHGAYGVESNLRAQWT 92 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 ++ +el+ll+++ SMil_00013373-RA_Salv 93 NAVEELNLLNHH 104 *****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.998	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-30	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MDEAACAVCR HLGKQCDEDC ILGPYFPQER TQEFKYVHKV FGIHNLTQIV SCVEEHERPT 60 AIETLIIEAK MRVHDKVHGA YGVESNLRAQ WTNAVEELNL LNHHLRSLRA QLNRENKFAS 120 SSITISLRPS LPNLFNYLRP YVELQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-20	4	105	10	111	LOB family transfactor Ramosa2.1
5ly0_B	8e-20	4	105	10	111	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-22	LOB domain-containing protein 2