PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013445-RA_Salv
Common NameMYB38
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 92aa    MW: 10735.3 Da    PI: 10.1128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013445-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-181865148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT eEd++l+++++ +G g W++ ar  g++Rt+k+c++rw++yl
  SMil_00013445-RA_Salv 18 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 65
                           79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-241068IPR009057Homeodomain-like
PROSITE profilePS5129422.4751369IPR017930Myb domain
SMARTSM007171.0E-121767IPR001005SANT/Myb domain
PfamPF002495.7E-171865IPR001005SANT/Myb domain
SuperFamilySSF466891.02E-211992IPR009057Homeodomain-like
CDDcd001675.17E-102065No hitNo description
Gene3DG3DSA:1.10.10.606.3E-76992IPR009057Homeodomain-like
PROSITE profilePS512947.8937092IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MTKMDKRPCN SHEPEVRKGP WTMEEDLILI NYIANHGEGV WNSLARSAGL KRTGKSCRLR  60
WLNYLRPDVR RGNITADEHL LIIELHAKWG NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-15149223100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593921e-148KF059392.1 Salvia miltiorrhiza MYB-related transcription factor (MYB38) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097428.11e-55myb-related protein 305
SwissprotP813917e-56MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A059PSM51e-59A0A059PSM5_SALMI; MYB-related transcription factor
STRINGGLYMA05G08690.16e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.15e-51myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]