PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013584-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 203aa    MW: 23696.4 Da    PI: 7.0306
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013584-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.7e-30129187159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +dDg++WrKYG+K+vk+s++pr+Y++C+  +C+vkk+ver+a+d ++v++tYeg Hnhe
  SMil_00013584-RA_Salv 129 MDDGFKWRKYGKKMVKSSPNPRNYFKCSNGECSVKKRVERDANDSRFVITTYEGVHNHE 187
                            59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-31117189IPR003657WRKY domain
SuperFamilySSF1182902.62E-26122189IPR003657WRKY domain
PROSITE profilePS5081129.471124189IPR003657WRKY domain
SMARTSM007743.7E-32129188IPR003657WRKY domain
PfamPF031066.6E-23130187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MERNKEELIW GTSQKGKKIN FDSAIDAGIN PQFQKSHNPN PNPNPNPNFD EVVHDILHLD  60
DQIYFKDVSD YLMSEENPEE TDLSQNKSIY DESSSSIGNK EYRTIVKNYN KEKQDFRVAF  120
RTKSKLEIMD DGFKWRKYGK KMVKSSPNPR NYFKCSNGEC SVKKRVERDA NDSRFVITTY  180
EGVHNHESPT CVLYCNPKSF LFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24119190778Probable WRKY transcription factor 4
2lex_A2e-24119190778Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554654.11e-49probable WRKY transcription factor 51
TrEMBLA0A2G9IAT53e-56A0A2G9IAT5_9LAMI; Uncharacterized protein
STRINGXP_010243312.13e-44(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.18e-37WRKY DNA-binding protein 51