PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013760-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ZF-HD
Protein Properties Length: 198aa    MW: 21871.8 Da    PI: 10.1906
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013760-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.45.4e-311569358
            ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                           ++rYkeClkNhA+ +G+havDGCgEf+p+ g++g+ ++lkCaACgCHRnFHRre+e
  SMil_00013760-RA_Salv 15 RARYKECLKNHAVGIGAHAVDGCGEFLPA-GDDGSLESLKCAACGCHRNFHRRESE 69
                           789*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.4E-291668IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-291767IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-191869IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.6981867IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.33E-18125196IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-30127197IPR009057Homeodomain-like
PROSITE profilePS500718.568133197IPR001356Homeobox domain
TIGRFAMsTIGR015653.0E-25135191IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSRATRSRAR RRCGRARYKE CLKNHAVGIG AHAVDGCGEF LPAGDDGSLE SLKCAACGCH  60
RNFHRRESEG YGNQQLVLAH HPHPLGHFGY RSSGGYLQVG PPQRAAPVAL ALPSSSGGAG  120
EMEDYYSGGG GGSSKKRFRT KFTAEQKDRM LRLAERLDWK IQKQDEELVQ QFCSEAGIKR  180
HVLKVWMHNN KHTLGKKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A9e-251351931775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100018.16e-93zinc-finger homeodomain protein 1-like
SwissprotA2Z2592e-63ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH53e-63ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A4D8ZTX28e-95A0A4D8ZTX2_SALSN; Uncharacterized protein
STRINGGLYMA02G04550.23e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-60homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]