PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013761-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 255aa    MW: 28105.9 Da    PI: 10.1641
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013761-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.8e-07991202345
                            -HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwq 45 
                            +W+ Ia++++ gRt++++k +w+
  SMil_00013761-RA_Salv  99 RWAQIAKHLP-GRTDNEVKIFWN 120
                            5*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.6E-559125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-56690IPR009057Homeodomain-like
SuperFamilySSF466891.54E-966124IPR009057Homeodomain-like
PROSITE profilePS500908.03766123IPR017877Myb-like domain
PfamPF002493.0E-966121IPR001005SANT/Myb domain
CDDcd001676.27E-967120No hitNo description
Gene3DG3DSA:1.10.10.604.5E-1098123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MRRGPTPSSS PSSPETRRKP NLSLTLCSLS SISSLTLNSL SRPTPSLTQW QQPPPSTAAI  60
APRHHKEDEK LINYISTYGH GCWSTVPRLA GPSLSLSHRW AQIAKHLPGR TDNEVKIFWN  120
SSIKKKIMAH HNMSSSALIS SSNLQHPNLI IPNNPQIDQI IIPNSQMEQL GCQALKQDNG  180
VVLGYDGGYD QDSALLDALM PELAEMAKGL EFGVSANAAE PPQRAALPCS PPELRRPRRR  240
RHRHRRTPSF GEGVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239RRPRRR
2235242RPRRRRHR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0595211e-114KF059521.1 Salvia miltiorrhiza MYB-related transcription factor (MYB57) gene, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1589635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.21e-23myb domain protein 26