PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013772-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 254aa MW: 27402 Da PI: 4.717

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013772-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.7e-05	126	161	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ ++ + Lr+llP + +K++ a++Le+A +YI+ Lq SMil_00013772-RA_Salv 126 RLSDKTHCLRKLLPGD-----EKMDMATVLEEAYKYIRFLQ 161 6677777799999987.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.851	111	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.45E-6	120	165	No hit	No description
SuperFamily	SSF47459	5.63E-8	121	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-8	126	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEKEFEFQQA LPISGEASAS ASAASIDEAY FSGICAGLSF RSLLAAGSPD PLKPPETEPL 60 FSSDDGATPL YNFFAETAPS PLRHQLPGLL SYEPPQNAAA IDSPAPNPRS EVDPSGKRPR 120 RRQPCRLSDK THCLRKLLPG DEKMDMATVL EEAYKYIRFL QSQVSALQCM PCRSADDGAA 180 TNAAFGGDLP KLNRQQLLQV VTNSPAVQAQ LCAEGCCVYA AEQLLLMKKI ADQKAALIDQ 240 EVMYGSSNPS LFNS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022864339.1	1e-51	transcription factor bHLH117
TrEMBL	A0A4D9B9V3	1e-117	A0A4D9B9V3_SALSN; Uncharacterized protein
STRING	evm.model.supercontig_8.253	6e-37	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11250	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	3e-25	bHLH family protein