PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013893-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 253aa MW: 28919.8 Da PI: 4.9847

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013893-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.1	7.4e-14	80	123	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++N+++ Lr ++P+ +K++Ka+i + A+eYIksLq SMil_00013893-RA_Salv 80 VSERNRRRKLNERLYALRAVVPNI-----TKMDKASIIRDAIEYIKSLQ 123 57*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.041	73	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.12E-14	76	127	No hit	No description
SuperFamily	SSF47459	2.22E-17	77	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-16	79	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-17	79	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-11	80	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
LIFTLFPRKA SPPHTLSTPI SYSHTLNMEN FDDDYTNFWE ANMFLQTEEL GSYFDEAISV 60 YYDSSSPDGV QLSPASKNIV SERNRRRKLN ERLYALRAVV PNITKMDKAS IIRDAIEYIK 120 SLQDEERRIL AEISDLELNG DFFEMDQEDV TNFRSKPKRT KVDKASSPIE VLEFRVSNMG 180 ENVVVVSLAC SKRRDTMIRL CEAFESLKLK IITCSINAFS GRLFKTLFLE GNDEDKDVLR 240 EKIEAAIAAA SSK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257455	0.0	KP257455.1 Salvia miltiorrhiza clone 22 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077906.1	1e-108	transcription factor bHLH35
Swissprot	Q2HIV9	7e-74	BH035_ARATH; Transcription factor bHLH35
TrEMBL	A0A0H3YC25	1e-162	A0A0H3YC25_SALMI; Basic helix-loop-helix transcription factor
STRING	XP_009760780.1	2e-91	(Nicotiana sylvestris)
STRING	XP_009603227.1	2e-91	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2923	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	6e-63	bHLH family protein