PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013897-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 190aa MW: 21466.3 Da PI: 9.5883

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013897-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.5	2.6e-32	70	124	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prlrWt+eLH++Fv+av+qLGG++kAtPk+il+lm+v+gLtl+h+kSHLQk+Rl SMil_00013897-RA_Salv 70 RPRLRWTTELHDQFVKAVDQLGGANKATPKAILNLMGVEGLTLYHLKSHLQKFRL 124 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.248	67	127	IPR017930	Myb domain
SuperFamily	SSF46689	6.81E-17	68	125	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-29	69	124	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-24	71	125	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-9	72	122	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MTTRRRDPGG CWWWAGGRAA DEASGGESAF GAMCENERRR RELVALGGYQ LQDAVPQEVD 60 ADIFQLSYPR PRLRWTTELH DQFVKAVDQL GGANKATPKA ILNLMGVEGL TLYHLKSHLQ 120 KFRLGKTGRK LWRKEFIPPN YYRKGDDRLP AMNLEAQGPS TTNAFNMNGT NILGAEAYGN 180 LHLLVEREKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	70	126	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	70	126	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	70	126	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	70	126	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	70	126	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	70	126	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	70	126	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	70	126	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	70	126	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	70	126	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	70	126	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	70	126	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	41	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082881.1	2e-64	myb family transcription factor APL-like isoform X1
Refseq	XP_011082882.1	2e-64	myb family transcription factor APL-like isoform X2
TrEMBL	A0A2G9HGM7	3e-58	A0A2G9HGM7_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17910	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-29	G2-like family protein