PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014017-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 176aa    MW: 19065.8 Da    PI: 6.9588
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014017-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.7e-39101101100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            +C aCk+lrrkC+k+Cv+apyf ++q +++fa+vh++FGasn +kll ++p++ r da+ +l+yeA ar+rdPvyG+v++i++lqqq+
  SMil_00014017-RA_Salv  10 PCGACKFLRRKCVKGCVFAPYFDSDQgTAHFAAVHRVFGASNASKLLLRIPPHCRLDAVVTLCYEALARVRDPVYGCVAHIFTLQQQV 97 
                            7***********************9989************************************************************ PP

                 DUF260  88 eqlkaelallkee 100
                             +l+aela+++++
  SMil_00014017-RA_Salv  98 VNLQAELAYTQAR 110
                            ********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7449111IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-3810108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSCDGGGGGP CGACKFLRRK CVKGCVFAPY FDSDQGTAHF AAVHRVFGAS NASKLLLRIP  60
PHCRLDAVVT LCYEALARVR DPVYGCVAHI FTLQQQVVNL QAELAYTQAR ISTLQCGPSL  120
PILSSVVDAS PSSMDMVSFC SSVDQEVEDD GDLQSLAREY VSRYFPGVRF MPPTPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3961177117LOB family transfactor Ramosa2.1
5ly0_B4e-3961177117LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090856.26e-96LOB domain-containing protein 19
SwissprotO221322e-66LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A4D8ZUD41e-109A0A4D8ZUD4_SALSN; Uncharacterized protein
STRINGcassava4.1_030486m7e-85(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.15e-69LOB domain-containing protein 19