PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014051-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 241aa    MW: 27088.6 Da    PI: 8.4698
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014051-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.9e-1998152256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ ++tk+q   Lee F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  SMil_00014051-RA_Salv  98 RKKLRLTKTQSALLEESFKQHSTLNPKQKQDLARELKLRPRQVEVWFQNRRARTK 152
                            678899***********************************************98 PP
2HD-ZIP_I/II123.31.2e-3998187191
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rl+k q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+
  SMil_00014051-RA_Salv  98 RKKLRLTKTQSALLEESFKQHSTLNPKQKQDLARELKLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK 185
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 eel 91 
                             +l
  SMil_00014051-RA_Salv 186 -AL 187
                            .55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.294154IPR001356Homeobox domain
SuperFamilySSF466895.13E-1895162IPR009057Homeodomain-like
SMARTSM003896.5E-1596158IPR001356Homeobox domain
PfamPF000463.0E-1698152IPR001356Homeobox domain
CDDcd000869.65E-1698155No hitNo description
Gene3DG3DSA:1.10.10.604.5E-1798152IPR009057Homeodomain-like
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
PfamPF021834.3E-10154188IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.3E-24154197IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGFDDLCNTG LVLGLGFSSS ASKKPSKNLE PSLTLSLSGE TYDLAVKKAD SDNNLYRQDS  60
AASSFSNVSV KREREMGSEE VEIERRVSDE DDDGPNGRKK LRLTKTQSAL LEESFKQHST  120
LNPKQKQDLA RELKLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKKCCETL TDENRRLQKE  180
LQELKALKLA QPLYMQLPAA TLTMCPSCER IGGAAADNTA KTSYVTKPHF YNPFTNPSAA  240
C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099420.11e-145homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-100HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A4D8YV981e-152A0A4D8YV98_SALSN; Homeobox-leucine zipper protein
STRINGVIT_00s0732g00010.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-90HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]