PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00014063-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 233aa MW: 25666.1 Da PI: 8.7374

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00014063-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	46.6	9.5e-15	2	62	1	56
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56 +C++C+vlr++C++ C+l+p++ ++q +++ +v+k+FG++ ++++++a+pe++r+ SMil_00014063-RA_Salv 2 SCNGCRVLRKGCSETCILRPCLqwiesTEAQGHATVFVAKFFGRAGLMSFISAVPETQRPG 62 6*******************9998777889************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.825	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.0E-12	2	62	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESTE AQGHATVFVA KFFGRAGLMS FISAVPETQR 60 PGNYHSSFCL HLTKEEFDFL SFGLWRSSLS VVAVRSSRED RQSGQWGGGP SGHRQLARLP 120 GGRRDRAPRR RLEADSELLG GESAPDDASD CTDMFRLQHH ACPSSKRRRL PDEPPKVMQL 180 ADLDLSLTPG KKGGALPEKR RLGSPSMNSE GSVTTTCTGD CRANELKLLN LFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	169	KRRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097231.1	9e-76	LOB domain-containing protein 37-like
TrEMBL	A0A2G9HIR7	1e-75	A0A2G9HIR7_9LAMI; Uncharacterized protein
STRING	XP_009626676.1	6e-62	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-37	LOB domain-containing protein 38