PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014065-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARR-B
Protein Properties Length: 388aa    MW: 44020.9 Da    PI: 8.4277
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014065-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like651.3e-20227275554
                G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                            +Wt+eLH++F++a+eqL G+ +  Pk+ile+m+ ++Lt+ +v+SHLQk R
  SMil_00014065-RA_Salv 227 EWTQELHTKFLNAIEQL-GEGRCFPKEILEMMNEPSLTRMQVASHLQKCR 275
                            7****************.9*****************************98 PP
2Response_reg47.59.5e-17211251106
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl+vd +   + + ++ le  +y +v+ ++++++a+ +l+  +  +D+++  i+ p+++G++ll++     + +p++++++ ++   a
  SMil_00014065-RA_Salv  21 VLLVDHDAEALINTAKQLEMCQY-KVTFVEHASAAISMLPSGKakFDVVMANINSPDLHGFKLLQHA--VYMCIPVVLMSDDDDAFIA 105
                            89*********************.***************888888*****************99864..4477*************** PP

                            HHHHHTTESEEEESS--HHH CS
           Response_reg  87 lealkaGakdflsKpfdpee 106
                             +al+ Ga  ++ Kp+++e 
  SMil_00014065-RA_Salv 106 MRALEHGAFLYVKKPISMEF 125
                            ***************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.7E-2216140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.3E-2317145No hitNo description
SMARTSM004481.2E-1419129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.88220134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-1121126IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.43E-1422133No hitNo description
SuperFamilySSF466895.2E-15222275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-19223276IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-19226277IPR006447Myb domain, plants
PfamPF002492.1E-7227274IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MWEAGRNNSP LAHAMMHGIH VLLVDHDAEA LINTAKQLEM CQYKVTFVEH ASAAISMLPS  60
GKAKFDVVMA NINSPDLHGF KLLQHAVYMC IPVVLMSDDD DAFIAMRALE HGAFLYVKKP  120
ISMEFLRCLW QHVVREKTRM VRERDMFITS NNLASICSVQ FREVTHPRDE NPNPNPNPNH  180
NPNMVMKNKG KCKSKGRSRY DDYGEEYDSE SHVMSQKGNV RRKMCTEWTQ ELHTKFLNAI  240
EQLGEGRCFP KEILEMMNEP SLTRMQVASH LQKCRNDKWR APEERKSMGQ TSEHATSSGS  300
AKPRRFGSKP LVAYSGQSSD PETQTLSNGP KTPHHYGTGT NSSSKLRHAS DDCFNFLDMN  360
CLTHHFSGGH QQHGTKNAGR AYNNHQVH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079700.11e-130two-component response regulator ARR14-like
TrEMBLA0A4D9BEQ91e-161A0A4D9BEQ9_SALSN; Two-component response regulator ARR-B family
STRINGMigut.D00936.1.p1e-116(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-44response regulator 2