PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00014520-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

M-type_MADS

Protein Properties

Length: 215aa MW: 24028 Da PI: 10.9562

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00014520-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.3	3.5e-22	20	67	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i ++ r+vtfskRr+g++KKA ELSvLC++++a+iifs g+ y + SMil_00014520-RA_Salv 20 LIADENARTVTFSKRRAGLFKKATELSVLCGTQIALIIFSLGGRAYSF 67 5889999*********************************99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.203	11	71	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.2E-29	11	70	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-26	11	86	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.72E-31	12	81	No hit	No description
PRINTS	PR00404	2.2E-18	13	33	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-22	21	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-18	33	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-18	48	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MAPPQAKKKS QGRRKIDMKL IADENARTVT FSKRRAGLFK KATELSVLCG TQIALIIFSL 60 GGRAYSFGHP DVESIIGRFF NRNPTPTPQE SAHAMRIRAS MLQEIKAQFD QKSEELETKK 120 KRTKEIEAAL ESSSYQTTEE GLDGLDIHQL QQLKEKMVRL REQMRRLANA PRANAVVAPA 180 VPGPVGAKSA RSVPPLIWQK LGKMKLVLLQ FHLIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	7e-16	12	91	1	77	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	7e-16	12	91	1	77	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	7e-16	12	91	1	77	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	7e-16	12	91	1	77	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	7e-16	12	91	1	77	Myocyte-specific enhancer factor 2A
3kov_B	7e-16	12	91	1	77	Myocyte-specific enhancer factor 2A
3kov_I	7e-16	12	91	1	77	Myocyte-specific enhancer factor 2A
3kov_J	7e-16	12	91	1	77	Myocyte-specific enhancer factor 2A
3p57_A	7e-16	12	91	1	77	Myocyte-specific enhancer factor 2A
3p57_B	7e-16	12	91	1	77	Myocyte-specific enhancer factor 2A
3p57_C	7e-16	12	91	1	77	Myocyte-specific enhancer factor 2A
3p57_D	7e-16	12	91	1	77	Myocyte-specific enhancer factor 2A
3p57_I	7e-16	12	91	1	77	Myocyte-specific enhancer factor 2A
3p57_J	7e-16	12	91	1	77	Myocyte-specific enhancer factor 2A
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012827635.1	2e-75	PREDICTED: uncharacterized protein LOC105948920
TrEMBL	A0A4D8YFR6	5e-95	A0A4D8YFR6_SALSN; MADS-box transcription factor, plant
STRING	Migut.I00404.1.p	2e-77	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15656	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-30	AGAMOUS-like 62