PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014595-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 163aa    MW: 17729.3 Da    PI: 10.0441
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014595-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000754365123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C++ F++   L  H  +H
  SMil_00014595-RA_Salv 43 FTCKTCDRQFPSFQALGGHRASH 65
                           89**********99999998887 PP
2zf-C2H2140.0001587109123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++Cg+ F+    L  H+r+H
  SMil_00014595-RA_Salv  87 HECSICGQEFPLGQALGGHMRRH 109
                            78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.63E-941109No hitNo description
SMARTSM003550.144365IPR015880Zinc finger, C2H2-like
PfamPF139126.2E-124367IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5564370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139122.0E-1086110IPR007087Zinc finger, C2H2
SMARTSM003550.06687109IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.43287109IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MMKRSRDGEA DDISVMANCL MLLSTAVAGT GASDGRGDSS RIFTCKTCDR QFPSFQALGG  60
HRASHKKPRL GGGGEPLPPS PPKPKTHECS ICGQEFPLGQ ALGGHMRRHR TAMVDQSHRA  120
PPPSPPLSLF PVVKKPNNRR VFSLDLNLTP LENQYFFIAS SYV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091501.13e-61zinc finger protein ZAT12-like
TrEMBLA0A4D8YUS13e-70A0A4D8YUS1_SALSN; Uncharacterized protein
STRINGXP_009593204.14e-53(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-35C2H2 family protein