PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00014624-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 239aa MW: 25838.7 Da PI: 8.6905

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00014624-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sFs+ L H +H SMil_00014624-RA_Salv 92 YTCKTCNRSFSSFQALGGHRASH 114 9***********99999998887 PP
2	zf-C2H2	13.3	0.00025	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H SMil_00014624-RA_Salv 169 HECSYCGAEFASGQALGGHMRKH 191 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.06E-8	91	114	No hit	No description
PROSITE profile	PS50157	10.762	92	119	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.8E-11	92	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.058	92	114	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	94	114	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.06E-8	164	191	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.7E-4	167	193	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.2E-12	168	193	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.72	169	196	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.013	169	191	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	171	191	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
METATEEAAA TPCLNTDLIT KGKRTKRERP NSPVSFTITP PPRAAASSEE STTTEEADTA 60 RCLILLSRGH FNNNRRSDAA TTSYGGGAAC MYTCKTCNRS FSSFQALGGH RASHKKPRNE 120 KRYAIFSDDE DLTSPSSSSR NKFSPTSLSL QLSSVSTTTT TAVKSPRVHE CSYCGAEFAS 180 GQALGGHMRK HRGATAPSPR GVDEVEAGKW LSLDLNLPAP EDERERSPNR IPPPLLLHP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077260.1	1e-70	zinc finger protein ZAT5
Swissprot	Q681X4	2e-40	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A4D9AT16	9e-93	A0A4D9AT16_SALSN; Uncharacterized protein
STRING	Migut.F01919.1.p	1e-69	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	4e-33	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]