PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014654-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 236aa    MW: 27026.7 Da    PI: 7.1135
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014654-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.89.5e-45201443128
                    NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            pGfrFhPt+eel+++yL++ ++g+kl+  ++i  ++iyk++P +Lp   ++ ++e+ewyfF++rd+k+    r+nr+t++g+Wkatg+
  SMil_00014654-RA_Salv  20 PGFRFHPTEEELLDFYLRRMLAGNKLHG-DIIGFLNIYKHHPTELPgLaRI-NGEREWYFFVPRDRKH---GRPNRTTENGFWKATGS 102
                            9*************************99.99***************53244.5689**********97...59*************** PP

                    NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk++l++   +++ g+kktLvfy+grap+g+ktdWvm+eyr+
  SMil_00014654-RA_Salv 103 DKKILTSsdPRKALGVKKTLVFYEGRAPRGRKTDWVMNEYRM 144
                            *****98766778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.04118162IPR003441NAC domain
SuperFamilySSF1019411.28E-5118162IPR003441NAC domain
PfamPF023655.8E-2620144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MMDESSSSSS PSSSHGVELP GFRFHPTEEE LLDFYLRRML AGNKLHGDII GFLNIYKHHP  60
TELPGLARIN GEREWYFFVP RDRKHGRPNR TTENGFWKAT GSDKKILTSS DPRKALGVKK  120
TLVFYEGRAP RGRKTDWVMN EYRMPDACTL PQEIVLCKVY RKATSLKVLE QRAAMEEEMM  180
AYISPTPSSE YSMSFSDFED VKFSGGGQGW SCTTALNMDW NQDTLWPLDT TFMPLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-412016217168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092943.18e-98NAC domain-containing protein 35-like
SwissprotQ10S652e-79NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A2G9GYZ21e-104A0A2G9GYZ2_9LAMI; Uncharacterized protein
STRINGGLYMA11G10230.17e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35312248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.15e-85NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]