PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014742-RA_Salv
Common NameMYB3
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 184aa    MW: 21366.6 Da    PI: 9.6066
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014742-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.6e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEde+l++ +k++G g+W++ ++  g+ R++k+c++rw +yl
  SMil_00014742-RA_Salv 14 KGAWTKEEDERLIKHIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                           79******************************99************97 PP
2Myb_DNA-binding60.43.7e-1967111147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg++T+eEdel++ ++ +lG++ W++Ia++++ gRt++++k++w+++
  SMil_00014742-RA_Salv  67 RGNFTEEEDELIISLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                            89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.964961IPR017930Myb domain
SuperFamilySSF466894.31E-3013108IPR009057Homeodomain-like
SMARTSM007173.3E-141363IPR001005SANT/Myb domain
PfamPF002499.1E-161461IPR001005SANT/Myb domain
CDDcd001672.33E-111661No hitNo description
PROSITE profilePS5129429.29862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2965116IPR009057Homeodomain-like
SMARTSM007174.1E-1866114IPR001005SANT/Myb domain
PfamPF002491.1E-1767111IPR001005SANT/Myb domain
CDDcd001677.74E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLIKHIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIS LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLMSRG  120
IDPQTHRLLN PHNQNPRIVS MHTDHPTMMR NDVGFKVIAA ADRAHVLCDE QINLDLSIRP  180
PHLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593570.0KF059357.1 Salvia miltiorrhiza MYB-related transcription factor (MYB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097098.11e-92myb-related protein 308
SwissprotP813937e-86MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A059PSK21e-134A0A059PSK2_SALMI; MYB-related transcription factor
STRINGGorai.002G196700.11e-86(Gossypium raimondii)
STRINGXP_009764613.11e-86(Nicotiana sylvestris)
STRINGMigut.L00379.1.p2e-87(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.19e-87myb domain protein 7
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]