PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014745-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 210aa    MW: 23467.4 Da    PI: 9.253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014745-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-163378147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg+W++ Ed  l ++v+++G+++W+ Ia+ ++ gR++k+c++rw + 
  SMil_00014745-RA_Salv 33 RGPWSAAEDAVLTELVNKFGPRNWSMIAAGIP-GRSGKSCRLRWCNQ 78
                           89******************************.***********985 PP
2Myb_DNA-binding58.51.5e-1885129147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r+++T eEd  +++a+k +G++ W++Ia+ ++ gRt++ +k++w++ 
  SMil_00014745-RA_Salv  85 RKPFTDEEDRTIIEAHKVHGNK-WASIAKLLP-GRTDNAIKNHWNST 129
                            789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4492879IPR017930Myb domain
SuperFamilySSF466891.83E-3131126IPR009057Homeodomain-like
SMARTSM007175.3E-143281IPR001005SANT/Myb domain
PfamPF002491.9E-153378IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-263486IPR009057Homeodomain-like
CDDcd001672.72E-133577No hitNo description
PROSITE profilePS5129425.93480134IPR017930Myb domain
SMARTSM007172.0E-1784132IPR001005SANT/Myb domain
PfamPF002491.3E-1685129IPR001005SANT/Myb domain
CDDcd001671.96E-1387130No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2487132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
LMDGDVIDAA ERDEGGAMEV EAEDGGGAGA KVRGPWSAAE DAVLTELVNK FGPRNWSMIA  60
AGIPGRSGKS CRLRWCNQLN PYLKRKPFTD EEDRTIIEAH KVHGNKWASI AKLLPGRTDN  120
AIKNHWNSTL RRMHLKSKPD SSQNCTTEFM RASSDATSSG PALTLFNPSD EMDIGRWKIN  180
QSNQKTKLRP LQTVLSNNHR HFYRMEPLSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-42321326106B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594220.0KF059422.1 Salvia miltiorrhiza MYB-related transcription factor (MYB68) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076754.12e-67transcription factor MYB25
SwissprotQ425757e-50MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A059PSQ51e-124A0A059PSQ5_SALMI; MYB-related transcription factor
STRINGMigut.F00722.1.p4e-60(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128831620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-59myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]