PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014810-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 126aa    MW: 14344.8 Da    PI: 7.6576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014810-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-192071256
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                           +y+GVr +  +g+++AeIrd s    + +r++lg+f taeeAa+a+++a+ +++g+
  SMil_00014810-RA_Salv 20 KYRGVRKRQ-WGKYAAEIRDTSR---QgARVWLGTFSTAEEAARAYDRAAYEMRGH 71
                           8*****888.**********432...24**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.39E-182079No hitNo description
Gene3DG3DSA:3.30.730.102.8E-312080IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-232079IPR016177DNA-binding domain
PROSITE profilePS5103223.4722078IPR001471AP2/ERF domain
SMARTSM003803.0E-342084IPR001471AP2/ERF domain
PfamPF008476.0E-142071IPR001471AP2/ERF domain
PRINTSPR003672.9E-112132IPR001471AP2/ERF domain
PRINTSPR003672.9E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDEGPSNRGK SSGAEKDEVK YRGVRKRQWG KYAAEIRDTS RQGARVWLGT FSTAEEAARA  60
YDRAAYEMRG HLAILNFPEE YNLPSSSSHF AAPSGASQQG RQVFEFEYYD DKLLEDLLDD  120
KKNNKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-3611131114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843103.11e-52PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ9LTC52e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A4D8XPM81e-60A0A4D8XPM8_SALSN; Pathogenesis-related proteins transcriptional activator PTI5
TrEMBLA0A4D9C5H71e-60A0A4D9C5H7_SALSN; Pathogenesis-related proteins transcriptional activator PTI5
STRINGMigut.N00263.1.p8e-55(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.12e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]