PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014841-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 127aa    MW: 14059.2 Da    PI: 8.3208
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014841-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.31.3e-38101091100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+C++dC++apyfp+++p++fa+vhk++Gasnv k+l++lp + r +a+++l+yeA +r++dPvyG++g+++ l+qql+
  SMil_00014841-RA_Salv  10 RCAACKHLRRRCPSDCIFAPYFPSNNPRRFAYVHKIYGASNVGKILQDLPVSCRAQAADTLCYEAYCRIKDPVYGCAGMVSVLHQQLN 97 
                            6*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                             ++ +la++k+e
  SMil_00014841-RA_Salv  98 VAECQLATVKAE 109
                            *******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.5569110IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-3810107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
LILDGMNSSR CAACKHLRRR CPSDCIFAPY FPSNNPRRFA YVHKIYGASN VGKILQDLPV  60
SCRAQAADTL CYEAYCRIKD PVYGCAGMVS VLHQQLNVAE CQLATVKAEV AAIRNDSATL  120
TLPTWFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-331111012111LOB family transfactor Ramosa2.1
5ly0_B4e-331111012111LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00381DAPTransfer from AT3G26620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098999.14e-61LOB domain-containing protein 23-like
SwissprotP594671e-44LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594681e-44LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A4D8YKS08e-65A0A4D8YKS0_SALSN; Uncharacterized protein
STRINGMigut.K00626.1.p5e-55(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52772039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.15e-47LOB domain-containing protein 24