PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014926-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WOX
Protein Properties Length: 210aa    MW: 24063.2 Da    PI: 9.9442
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014926-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.11.1e-2180139357
                            --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                            +R+++t+eq+ +Le l+++  r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  SMil_00014926-RA_Salv  80 TRWNPTQEQIGILEMLYRSgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 139
                            7*****************99**************************************97 PP
2Wus_type_Homeobox1201e-3880141465
      Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                            tRW+Pt+eQi iLe+ly+sG+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq
  SMil_00014926-RA_Salv  80 TRWNPTQEQIGILEMLYRSGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141
                            8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.60875140IPR001356Homeobox domain
SuperFamilySSF466893.42E-1375145IPR009057Homeodomain-like
SMARTSM003898.9E-877144IPR001356Homeobox domain
PfamPF000462.3E-1980139IPR001356Homeobox domain
CDDcd000861.90E-580141No hitNo description
Gene3DG3DSA:1.10.10.601.7E-881139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGIQAMKVHH LPRGLIWDHD PPSLTLGCKR FRPLAPKLST ATAATFDLKS FIKPDQCSPR  60
SSDAQKKESS QVEAAQAGGT RWNPTQEQIG ILEMLYRSGM RTPNAQQIEQ ITAQLGKYGK  120
IEGKNVFYWF QNHKARERQK QKRTSLGLSP SARTPSSIFL SSPNEEEENN RYKRKCVFDE  180
VNKYCREEEE QDRTLKLFPL HPEGRSSLRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069676.21e-90WUSCHEL-related homeobox 4
SwissprotQ6X7J91e-62WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A4D9AMN61e-127A0A4D9AMN6_SALSN; Uncharacterized protein
STRINGMigut.C00548.1.p6e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61862335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.14e-65WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]