PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00015041-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 219aa MW: 24711 Da PI: 9.8333

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015041-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.1	1e-33	2	75	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ +++lvg+kktLvfy+grapkgekt+Wvmheyrl SMil_00015041-RA_Salv 2 GEREWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFR-GSALVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 75 578************************************.9****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.76	1	96	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-39	2	96	IPR003441	NAC domain
Pfam	PF02365	5.9E-16	6	75	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MGEREWYFFS LRDRKYPTGL RTNRATEAGY WKTTGKDKEI FRGSALVGMK KTLVFYRGRA 60 PKGEKTNWVM HEYRLHNKLS FKPSKEEWVV CRIFQKTAAI KRPQQTPPSP PDDSPSFGMP 120 VPPSPLQNYN TNDANVISSW NAADAALSSW PLSLSMNSLL LTALQLRGHQ PDNYGLMPFG 180 NHEFGASSFN MGSTSGVVDS LPQPLPPEQP PYNVDSNIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-32	1	102	68	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-32	1	102	68	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-32	1	102	68	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-32	1	102	68	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-32	1	102	68	171	NAC domain-containing protein 19
4dul_B	1e-32	1	102	68	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096994.1	1e-94	NAC domain-containing protein 92
TrEMBL	A0A2G9HGW4	3e-90	A0A2G9HGW4_9LAMI; Uncharacterized protein
STRING	POPTR_0015s03700.1	6e-75	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	2e-59	NAC domain containing protein 58