PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015146-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 858aa    MW: 99007 Da    PI: 6.4473
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015146-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1691.2e-21474558190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn YAk  GF +r+s+s  +++ +e +++++ Cs  g++++++ +     ++r+etrtgC a++ +k+ +  +w++ ++el HnH+
  SMil_00015146-RA_Salv 474 DFYNVYAKGQGFGIRVSNSWFRSKRRERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVIIKLVDARNWRIVEVELVHNHP 556
                            6*********************99999***************99888.....9**********************************9 PP

                   FAR1  89 la 90 
                            ++
  SMil_00015146-RA_Salv 557 VS 558
                            87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF563002.47E-9727196IPR029052Metallo-dependent phosphatase-like
Gene3DG3DSA:3.60.21.102.5E-12037190IPR029052Metallo-dependent phosphatase-like
CDDcd074159.09E-17438362No hitNo description
SMARTSM001564.3E-10352364IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PfamPF001498.6E-2880312IPR004843Calcineurin-like phosphoesterase domain, apaH type
PRINTSPR001141.9E-6780107IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTSPR001141.9E-67109136IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTSPR001141.9E-67142166IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PROSITE patternPS001250143148IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
Gene3DG3DSA:3.60.21.102.5E-120232370IPR029052Metallo-dependent phosphatase-like
SuperFamilySSF563002.47E-97243363IPR029052Metallo-dependent phosphatase-like
PRINTSPR001141.9E-67247274IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTSPR001141.9E-67303323IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTSPR001141.9E-67326342IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PfamPF031011.1E-19474559IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.409739775IPR007527Zinc finger, SWIM-type
PfamPF044343.5E-5749773IPR007527Zinc finger, SWIM-type
SMARTSM005758.2E-8750777IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0008270Molecular Functionzinc ion binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
LSCSSKSKYL PPPASIAAPF LPSVSQDSIN FYLEKGMDLE QWIAKVKEGQ HLSEDELQLL  60
CEYVKEILIE ESNVQPVNSP VTVCGDIHGQ FHDLMKLFQT GGHVPETNYI FMGDFVDRGY  120
NSLEVFTILL LLKARYPANI TLLRGNHESR QLTQVYGFYD ECQRKYGNAN AWRYCTDVFD  180
YLTLSAIIDG TASLTKSLAI LIPWRGTRRT YPCWYFVYMV AYLQILELLT SLVLVYKGLL  240
AFSILSGKQI RVIERNCEIP HEGPFCDLMW SDPEDIETWA VSPRGAGWLF GSRVTSEFNH  300
INKLDLVCRA HQLVQEGLKY MFQDKGLVTV WSAPNYCYRC GNVASILSFN ENMEREVKFF  360
TETEENNQMR GPRSGERTSK FEGFHIVAYL PLPGSSPLYH AITLFFVNQG ALIYFNCAPA  420
TVFSEPVFGE GDEYEDGDCS IVGHCDKPHS MQLEKEFLLP MVGLEFESFD EAYDFYNVYA  480
KGQGFGIRVS NSWFRSKRRE RYRAKLSCSS AGFKKKSEAN NPRPETRTGC PAMVIIKLVD  540
ARNWRIVEVE LVHNHPVSPE IKRFYKSHKK MIVAAKKALQ SEPMTSHHNL RENKWLHVLY  600
EDRQRWAPVY LKDTSFFGML PISEGEGSTA FFDGYVHKHT CLKEFLDKYD LALQRKYLKE  660
AMEDFESRSL NSELKTKLNF ELQLSKVYTK EMFKKCQIEV EGMYSCFNIK QVAANGPILT  720
FVVKERREGE GNEKEVRHYE VLYETTQVEV RCICGFFNFK GYLCRHALSV LNHNGVEEIP  780
SQYILHRWNK DCKRKFLLNS NISDADEESS SQWHENLFRR SLQVVEEGAQ SEQHYEAIMQ  840
ELNSLVTEVS LMDKIICD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ie4_C1e-108383549283Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
2npp_C1e-108383549283Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
2npp_F1e-108383549283Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
2nyl_C1e-109383548282Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
2nyl_F1e-109383548282Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
2nym_C1e-109383548282Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
2nym_F1e-109383548282Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
3dw8_C1e-108383549283Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
3dw8_F1e-108383549283Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
3k7v_C1e-108383549283Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
3k7w_C1e-108383549283Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
4i5l_C1e-1083835411285Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha
4i5l_F1e-1083835411285Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha
4i5n_C1e-1083835411285Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha
4i5n_F1e-1083835411285Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha
4lac_C1e-1083835411285Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
5w0w_C1e-1083835411285Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
5w0w_F1e-1083835411285Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
5w0w_I1e-1083835411285Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
5w0w_L1e-1083835411285Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.16e-79FAR1-related sequence 6