PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015204-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 258aa    MW: 29736.1 Da    PI: 9.2048
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015204-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-18201001298
                            HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            + ++l++p kf+ ++ +  +    ++le+e +   W+vk+  ++  + +++t+GW+eFvk+n++ e+Df++F+l+++s f  +v+++r
  SMil_00015204-RA_Salv  20 S-SNLCIPTKFMMKYRQAVQ--HSVVLETEYSpTLWDVKI--KNLNSDFYMTDGWSEFVKDNQVGERDFLTFRLMSESAF--KVSIYR 100
                            3.459**********54433..36*****877699*****..888888***************************99999..888877 PP
2B331.62.9e-101582341089
                            HHHTT-EE--HHH.HTT---..--SEEEEEE....TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                     B3  10 vlksgrlvlpkkfaeehggkkeesktltled....esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                            +    r+ lp kf ++ ++k ++  ++++e     ++g s  v    r    r+ l kGW eF  angL+ gD++ F+++  +e
  SMil_00015204-RA_Salv 158 NK--TRINLPQKFSKAANMKVKK--QVRMEYvgngRHGVSVAVDA--RPENYRVDLVKGWPEFRVANGLEPGDSCSFEFNP-DE 234
                            33..4689*****9887444333..35555510114445555555..6666669999*********************754.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-197104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.7888102IPR003340B3 DNA binding domain
SMARTSM010191.3E-1111102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-1914102IPR015300DNA-binding pseudobarrel domain
CDDcd100172.80E-1319100No hitNo description
PfamPF023628.4E-1620100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-11141234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-12144234IPR015300DNA-binding pseudobarrel domain
CDDcd100174.85E-7147240No hitNo description
PROSITE profilePS508638.825147245IPR003340B3 DNA binding domain
SMARTSM010190.018149243IPR003340B3 DNA binding domain
PfamPF023625.5E-8158235IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MPRSEYQRAS FMMFCRGDFS SNLCIPTKFM MKYRQAVQHS VVLETEYSPT LWDVKIKNLN  60
SDFYMTDGWS EFVKDNQVGE RDFLTFRLMS ESAFKVSIYR GDDCTKHLTS PMNSRRRVVD  120
EDESGIRRGR RPCKRKGEGA QFKEGNPLCF KICLKPYNKT RINLPQKFSK AANMKVKKQV  180
RMEYVGNGRH GVSVAVDARP ENYRVDLVKG WPEFRVANGL EPGDSCSFEF NPDEEVIYVR  240
ELLPAMEIKG QGVCAAVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135RRPCKRK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.17e-14B3 family protein