PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015205-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 230aa    MW: 26684.9 Da    PI: 10.3835
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015205-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.6e-1811102198
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                            ffkvl  s+v   ++l+lp +f++++++  + +++l++ d sgr+W+v++  ++ +++ + +t+GW++F+++  Lk g+f+vF+l  +
  SMil_00015205-RA_Salv  11 FFKVL--SNVDYIKLLRLPPNFLRKYELTLPANVKLRVDD-SGRRWNVRV--ERMDDGlFCFTNGWEKFAEDAALKFGEFLVFSLLAK 93 
                            99***..556666669**********98877777777555.*********..7777777*************************9874 PP

                            SEE..EEEEE- CS
                     B3  88 sefelvvkvfr 98 
                            se  l+v +++
  SMil_00015205-RA_Salv  94 SE--LNVDIYE 102
                            44..5888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-225106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-216106IPR015300DNA-binding pseudobarrel domain
CDDcd100174.11E-169101No hitNo description
PROSITE profilePS5086313.7479104IPR003340B3 DNA binding domain
PfamPF023623.6E-1511102IPR003340B3 DNA binding domain
SMARTSM010191.6E-1611104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.71E-9130220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-8133220IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.36134230IPR003340B3 DNA binding domain
SMARTSM010190.021136229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSGRSNETPS FFKVLSNVDY IKLLRLPPNF LRKYELTLPA NVKLRVDDSG RRWNVRVERM  60
DDGLFCFTNG WEKFAEDAAL KFGEFLVFSL LAKSELNVDI YETSCCKREI PLVELNAQGG  120
KARKRNCFMK EGNPLYFATY LRPYHRWTIS LPRAFSRAAN MKVKKQVRVK YVGKRRGLCV  180
ALSHRPPRPT IDLAKGWREF REANGLVVGK IYSFEFNPDD QVIYVNRVAS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-14B3 family protein