PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015206-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 220aa    MW: 25828.1 Da    PI: 9.1822
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015206-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.5e-1277165197
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            ffkvl  s+v   ++l+lp +f++++++  +e   ++l+  +++++e ++  ++    ++l + W++Fv++  Lk g+f+vF+++ +s
  SMil_00015206-RA_Salv  77 FFKVL--SSVDYIKLLRLPPNFLRKYELTLPE--NVKLRVDDSEEMECEV--ERMIWVVLLHEWWEKFVEDAALKFGEFLVFSVVAKS 158
                            99***..88888888***********988555..6777777788888888..55555599***********************87645 PP

                            EE..EEEEE CS
                     B3  89 efelvvkvf 97 
                            e   +v ++
  SMil_00015206-RA_Salv 159 EL--NVVIY 165
                            44..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-1571170IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-1571170IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.95275168IPR003340B3 DNA binding domain
CDDcd100171.03E-1075165No hitNo description
PfamPF023621.0E-977165IPR003340B3 DNA binding domain
SMARTSM010192.5E-577168IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MPLGINIRER PFKFLHPHHH TFLCNSHFSL KPKGELHPPT SSPPATAKKV ICKNEEEQKE  60
KKSPTPMPRR SNETPSFFKV LSSVDYIKLL RLPPNFLRKY ELTLPENVKL RVDDSEEMEC  120
EVERMIWVVL LHEWWEKFVE DAALKFGEFL VFSVVAKSEL NVVIYETSCC KREIPLLQLN  180
AQEDYILRYI TNDNEALHVK KRKKGLQKKL LHQRGQPTLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199203KKRKK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.16e-11B3 family protein