PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015294-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 225aa    MW: 24429.3 Da    PI: 5.0079
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015294-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-184999155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  SMil_00015294-RA_Salv 49 PVYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATAEMAARAHDVAALAIKG 99
                           68*****998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-124999IPR001471AP2/ERF domain
SMARTSM003801.3E-3550113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3150108IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-2150107IPR016177DNA-binding domain
PROSITE profilePS5103222.85350107IPR001471AP2/ERF domain
CDDcd000184.66E-3251108No hitNo description
PRINTSPR003671.3E-105162IPR001471AP2/ERF domain
PRINTSPR003671.3E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAELHNSEPE CSNSSTPKNL NHPKRPRDSD EAAAKDGGKR NKSSGSAHPV YRGVRMRAWG  60
KWVSEIREPK KKSRIWLGTF ATAEMAARAH DVAALAIKGG GAILNFPEIS ELLPRPATSS  120
PRDVQAAATK AAAMEHLGES EEDVSTPPAV ELGEIVELPR LYEGGGGGQE ELIVAADVGW  180
DYYINHPLLD SLEDCGLLLG DDNSMVIDDF MSANFQGLLW NHHYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1842107672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093630.11e-78ethylene-responsive transcription factor TINY-like
TrEMBLA0A4D9AHT51e-97A0A4D9AHT5_SALSN; EREBP-like factor
STRINGMigut.K00522.1.p6e-73(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.19e-42ERF family protein