PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015339-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 217aa    MW: 24557.3 Da    PI: 6.5034
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015339-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-088302246
                           T-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                           + W+ Ia+ ++ gRt++++k++w++
  SMil_00015339-RA_Salv  8 R-WSIIAAQLP-GRTDNDIKNYWNT 30
                           5.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.071136IPR017930Myb domain
SuperFamilySSF466892.04E-7636IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-11833IPR009057Homeodomain-like
CDDcd001673.37E-6832No hitNo description
PfamPF002494.9E-6830IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGICLKFRWS IIAAQLPGRT DNDIKNYWNT KLKKKLMGLI PSNHTKYSQP PFSNTFQTHP  60
HSLSTISQLY RDFNSFYLQT AKSLAPVLEP IPSSSLYSDT FSLTTSQYPY LPQTNQEPLP  120
DLCNNMLVFG GNEASCSSSD SRDHHHHRVK QEEIACGFQG FYGGFDQENH KFMLHDAFLD  180
DQKPSGINLI GGDGGSSGLV FNHDEGKSDE RETLYYY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090100.19e-38transcription factor RAX2-like
TrEMBLA0A4D9BB911e-61A0A4D9BB91_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1829833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.18e-16myb domain protein 103