PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015434-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 256aa    MW: 29015.1 Da    PI: 7.6734
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015434-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1004.2e-31311822105
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ 65 
                             g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak +i+el+ +                        
  SMil_00015434-RA_Salv  31 MGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKNEIDELPPLqipqgicfsqmlnpnqkhllstst 118
                            579*************************************************************777777766666655555443221 PP

                    TCP  66 ..ssssaseceaesssssasnsssg...............................................kaaksaakskksqksa 104
                                                    +                                               +    ++++++ q+++
  SMil_00015434-RA_Salv 119 stH---------------------RseeeenpssfaslmsssasygrwdpsislglaatahhqhgdfvshqhQ----HQHQHQHQHQH 181
                            110.....................0112222333344555566777888877788776665544433322110....11111111111 PP

                    TCP 105 a 105
                            +
  SMil_00015434-RA_Salv 182 Q 182
                            1 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.3533391IPR017887Transcription factor TCP subgroup
PfamPF036341.5E-3233188IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MIPKEQAKQE SSSTTWSRLK DPRIVRVSRA MGGKDRHSKV CTVRGLRDRR VRLSVPTAIQ  60
LYDLQDRLGL NQPSKVVDWL LDAAKNEIDE LPPLQIPQGI CFSQMLNPNQ KHLLSTSTST  120
HRSEEEENPS SFASLMSSSA SYGRWDPSIS LGLAATAHHQ HGDFVSHQHQ HQHQHQHQHQ  180
HQHQHQHQHQ LLVYQSAQPY FVPQINAAFD TKHHPSFHGS DLSSSSHVRP FDFNTTADLL  240
PSQSSDADDQ NKPNLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-183892155Putative transcription factor PCF6
5zkt_B2e-183892155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338357.16e-61PREDICTED: transcription factor TCP17
TrEMBLA0A4D9BZV83e-93A0A4D9BZV8_SALSN; Uncharacterized protein
STRINGPGSC0003DMT4000034532e-60(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-45plastid transcription factor 1