PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015458-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 368aa    MW: 42464.3 Da    PI: 5.9005
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015458-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34641552102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k++e+++d+e++ +isws ++nsf+v+d+++f++++Lp++Fkhsnf+SFvRQLn+Y F+k+++++         weF+++ F++g
  SMil_00015458-RA_Salv  64 FLRKTFEMVDDPETDCIISWSPTKNSFIVWDPHRFSTDLLPRHFKHSNFSSFVRQLNTYRFRKIDSDR---------WEFANEGFQQG 142
                            9********************999*****************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            kk+ll++i r+k+
  SMil_00015458-RA_Salv 143 KKHLLKHITRRKQ 155
                            ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-3857148IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.11E-3459153IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5760153IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3164153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-176487IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-17102114IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340103127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-17115127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
LALQMARNEL TSAEIMQSIK KYEVLMSVKE EPPVSHEESG GAVTEEERLP KPLDGLKENG  60
PPPFLRKTFE MVDDPETDCI ISWSPTKNSF IVWDPHRFST DLLPRHFKHS NFSSFVRQLN  120
TYRFRKIDSD RWEFANEGFQ QGKKHLLKHI TRRKQNFQIS RKQSWVDSPK HGAEEELENL  180
KNNQNKLQTE VLNLRQQQEM TQSHLAAVEK RLRITETKQK HMTLFLIKFM KNPQLLQRIT  240
EKMKKIRALG SGEVLKKRRL AAPDLEEDDA CLMAAMRAVD VDDDKRIQSD IETLLCCDES  300
GTGSSETTQS RDDFVLWEKL LEDDMIYEDD RAQCDVVSEL ENVVAKPSEC GTQMRGLVEL  360
VGCLATIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-225515317129Heat shock factor protein 1
5d5v_B3e-225515317129Heat shock factor protein 1
5d5v_D3e-225515317129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022856763.11e-122heat stress transcription factor A-2-like
TrEMBLA0A2G9GAA51e-140A0A2G9GAA5_9LAMI; Heat shock transcription factor
STRINGXP_009606363.11e-113(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.17e-74heat shock transcription factor A2