PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015559-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 252aa    MW: 28795.5 Da    PI: 6.2567
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015559-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.51.8e-32261172101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+++i++d+++++++sw++ng+sf+++d+ +f+ ++Lp+yF+h+nf+SFv QLn YgFkk+  +++        we++ + F++g
  SMil_00015559-RA_Salv  26 FLTKTFQIVNDANTNSIVSWTQNGDSFIIWDHIKFSAQILPNYFRHNNFSSFVYQLNSYGFKKIGVDHQ--------WEYSSPDFQQG 105
                            9****************************************************************9994........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            k +ll+++kr++
  SMil_00015559-RA_Salv 106 KPHLLSNMKRRA 117
                            **********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.1E-4622116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.32E-2923116IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.3E-3323116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-172649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-2926116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-177789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSIEIGSGDS KYVAARRFGI GPPPPFLTKT FQIVNDANTN SIVSWTQNGD SFIIWDHIKF  60
SAQILPNYFR HNNFSSFVYQ LNSYGFKKIG VDHQWEYSSP DFQQGKPHLL SNMKRRALQM  120
SPTPQHEMKK LKKQQSDMEL KMVELRRTAD KLEASSKKLM VQWAKACEII VKTEKVVVPA  180
QENEEDAVSL SEKQPLVASS AADDELKSAA MIGDYSVELD NLNKRLFENE DVEASNQHAS  240
AQNFQEWFVD LW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-24241173106Heat shock factor protein 2
5d8l_B2e-24241173106Heat shock factor protein 2
5d8l_D2e-24241173106Heat shock factor protein 2
5d8l_F2e-24241173106Heat shock factor protein 2
5d8l_H2e-24241173106Heat shock factor protein 2
5hdk_A3e-24241178111Heat shock factor protein 2
5hdk_B3e-24241178111Heat shock factor protein 2
5hdk_C3e-24241178111Heat shock factor protein 2
5hdk_D3e-24241178111Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022893710.14e-47heat stress transcription factor A-7a-like
SwissprotQ9LVW25e-35HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLA0A4D8Y8Q45e-99A0A4D8Y8Q4_SALSN; Heat shock transcription factor, other eukaryote
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1687534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.12e-37heat shock transcription factor A9