PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015575-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 201aa    MW: 22766.7 Da    PI: 9.5179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015575-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-172976148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEdell +++k+ G g+W+t +++ g+ R++k+c++rw +yl
  SMil_00015575-RA_Salv 29 RGSWTAEEDELLSNYIKREGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 76
                           89******************************99************97 PP
2Myb_DNA-binding49.78.6e-1682127148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg  +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  SMil_00015575-RA_Salv  82 RGHISADEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 127
                            667799****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-222079IPR009057Homeodomain-like
PROSITE profilePS5129415.6212476IPR017930Myb domain
SuperFamilySSF466892.58E-2826123IPR009057Homeodomain-like
SMARTSM007172.6E-122878IPR001005SANT/Myb domain
PfamPF002491.8E-142976IPR001005SANT/Myb domain
CDDcd001675.34E-103176No hitNo description
PROSITE profilePS5129424.79177131IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2480132IPR009057Homeodomain-like
SMARTSM007176.7E-1581129IPR001005SANT/Myb domain
PfamPF002491.7E-1482127IPR001005SANT/Myb domain
CDDcd001672.33E-1186127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MRIPSTSRAG GEGKKAKPAP CCTKVGLKRG SWTAEEDELL SNYIKREGEG RWRTLPKKAG  60
LLRCGKSCRL RWMNYLRPSV KRGHISADEE DLILRLHRLL GNRWSLIAGR IPGRTDNEIK  120
NYWNTHLSKK LISEGIDPKT HKPFNPNPSI INHSHNRDGD GDGDKGILDC CNDDSLSSFL  180
NSLINDEMFS SQHQDHPAQH Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24271315108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-32AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089146.11e-92transcription repressor MYB5-like
SwissprotQ388506e-83MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A3S3NDU69e-93A0A3S3NDU6_9MAGN; Transcription repressor MYB5-like protein
STRINGXP_009607844.16e-87(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-79myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]