PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015801-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 181aa    MW: 20452 Da    PI: 4.4384
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015801-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.3e-397105198
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            +C aCk+lrr+C+++C++apyf  +q +++fa+vhk+FGasnv+kll++lpe+ r+da+ ++ yeA ar++dP+yG++++i++lqqq+
  SMil_00015801-RA_Salv   7 SCGACKFLRRRCTEECIFAPYFSYDQaANHFAAVHKVFGASNVSKLLSHLPEHSRSDAAITISYEALARMEDPIYGCIAHIFALQQQV 94 
                            6***********************9978************************************************************ PP

                 DUF260  88 eqlkaelallk 98 
                            ++l++e+++ +
  SMil_00015801-RA_Salv  95 ASLEEEIQMYG 105
                            ******98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.4716108IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-387103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTGVSSSCGA CKFLRRRCTE ECIFAPYFSY DQAANHFAAV HKVFGASNVS KLLSHLPEHS  60
RSDAAITISY EALARMEDPI YGCIAHIFAL QQQVASLEEE IQMYGKAMAN LGINGESSNG  120
YFSREWENEA IMQTMMDPGT SDEIFEAYLL ERLLEQDYYL CQDNNLESLW TKYAAPPLSQ  180
W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3531017104LOB family transfactor Ramosa2.1
5ly0_B5e-3531017104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858285.14e-70PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS83e-55LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A4D8ZBM41e-112A0A4D8ZBM4_SALSN; Uncharacterized protein
STRINGMigut.F00757.1.p1e-69(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-57LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]