PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00015837-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 208aa MW: 23622 Da PI: 9.923

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015837-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.9	6.8e-52	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yLk+kv + ++++ ++i+evd++k++PwdLp +e+e yfFs+++ ky++g+r+nrat sgyWkatg SMil_00015837-RA_Salv 14 LPPGFRFHPTDEELVVQYLKRKVLSYPVPA-SIIPEVDVCKSDPWDLP---GDSEQERYFFSTKQVKYPNGNRSNRATVSGYWKATGL 97 79*************************9.89***********...3467899************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++ + ++++vg+kktLvfy+g+ pkg +tdW+mheyrl SMil_00015837-RA_Salv 98 DKQIVGTrSHQVVGMKKTLVFYRGKPPKGCRTDWIMHEYRL 138 99856778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-59	10	152	IPR003441	NAC domain
PROSITE profile	PS51005	54.129	14	152	IPR003441	NAC domain
Pfam	PF02365	4.9E-27	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0010089	Biological Process	xylem development
GO:0010150	Biological Process	leaf senescence
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MEKVKVVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVLSYP VPASIIPEVD VCKSDPWDLP 60 GDSEQERYFF STKQVKYPNG NRSNRATVSG YWKATGLDKQ IVGTRSHQVV GMKKTLVFYR 120 GKPPKGCRTD WIMHEYRLTT KETWVLCRIF FKRRGAPPPP PVFYDFMANS SSASAASGIT 180 QISSSEDREE ESSSCNSFPS TSTRKQCV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-51	12	156	15	169	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-51	12	156	15	169	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-51	12	156	15	169	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-51	12	156	15	169	NO APICAL MERISTEM PROTEIN
4dul_A	6e-51	12	156	15	169	NAC domain-containing protein 19
4dul_B	6e-51	12	156	15	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00507	DAP	Transfer from AT5G13180	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086848.1	1e-112	NAC domain-containing protein 83
Swissprot	Q9FY93	2e-89	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2G9H1C1	1e-111	A0A2G9H1C1_9LAMI; Uncharacterized protein
STRING	GLYMA18G53954.1	1e-103	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-88	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]