PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015883-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HB-other
Protein Properties Length: 255aa    MW: 29399.1 Da    PI: 9.1823
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015883-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.7e-081952391354
                            HHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  13 eeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            ++L++  +   + +yp+++e+++L +++gL+ +q+ +WF N+R +
  SMil_00015883-RA_Salv 195 DILKNWWHhhsNWPYPTEDEKADLVERTGLELKQINNWFINQRKR 239
                            55555555332469***************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-13650IPR005540KNOX1
PfamPF037902.5E-13848IPR005540KNOX1
PROSITE profilePS5007112.082180243IPR001356Homeobox domain
SMARTSM003892.8E-11182247IPR001356Homeobox domain
SuperFamilySSF466891.03E-15182244IPR009057Homeodomain-like
CDDcd000865.68E-11183241No hitNo description
Gene3DG3DSA:1.10.10.607.8E-24187244IPR009057Homeodomain-like
PfamPF059205.3E-17200239IPR008422Homeobox KN domain
PROSITE patternPS000270218241IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MANSGQQLKA EIAGHPLCEQ LVAAHVACLR VATPMGELPN IEAQLCESQH LLRSYAQTAT  60
HSLSKHQSQQ LETLLRQYVL ALWSLKEQLH QHVNRCREIE HTFISLTGNA LYPQSFSHQL  120
AFHPNSLGAG ARVGQGSGAT MWEDDEEHSE RALVERVRKK LKIELKEGFK SRIQQVRDEI  180
LRKRRSGKLA DDTTDILKNW WHHHSNWPYP TEDEKADLVE RTGLELKQIN NWFINQRKRK  240
WQNSNASRSK NNTYS
Functional Description ? help Back to Top
Source Description
UniProtPossible developmental regulator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072032.13e-92homeobox protein HD1
SwissprotP466061e-88HD1_BRANA; Homeobox protein HD1
TrEMBLA0A4D8Y4D67e-91A0A4D8Y4D6_SALSN; Uncharacterized protein
STRINGXP_004511615.16e-90(Cicer arietinum)
STRINGAES941297e-90(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-90KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]