PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015891-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 292aa    MW: 32710.4 Da    PI: 4.9122
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015891-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix803.4e-2569166186
               trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                            +Wt+++v++Li ++ ++++++++++           +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++
  SMil_00015891-RA_Salv  69 KWTDNMVRLLIMVVFYIGDEVGASEaaekkkgagllQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtSCRVV 156
                            7*********************98777889999999**********************************************669*** PP

               trihelix  77 stcpyfdqle 86 
                            ++ +++d+++
  SMil_00015891-RA_Salv 157 ENQALLDSMD 166
                            *****99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2267191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MESSGMSGGI YSNLQPSMLG LEMSLHHKLP PQHPMPAFPK SKNQSLTLSD DDTSADDGKR  60
KMSPWQRMKW TDNMVRLLIM VVFYIGDEVG ASEAAEKKKG AGLLQKKGKW KSVSRAMMER  120
GFYVSPQQCE DKFNDLNKRY KRVNDILGKG TSCRVVENQA LLDSMDLPPK VKDEVKKLLN  180
SKHLFFREMC AYHNSCAAAQ PEGACLHKAP VTPNLNKGGD EGATKLGDDD EGDVDEEDEE  240
EEEEEEDEEE EEYTDDQRKR ARSKGVIEQL DXENSAFHAG ASRSALSKTL IN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094441.11e-102uncharacterized protein LOC105174138
TrEMBLA0A2G9GXC21e-108A0A2G9GXC2_9LAMI; Transcription factor GT-2
STRINGevm.model.supercontig_5.1047e-92(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-63sequence-specific DNA binding transcription factors