PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00015950-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

WOX

Protein Properties

Length: 131aa MW: 15026.2 Da PI: 10.359

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015950-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.3	4.7e-22	28	87	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ SMil_00015950-RA_Salv 28 TRWNPTQEQIGILEMLYQGgMRTPNAHQIEQITAQLanygKIEGKNVFYWFQNHKARERQ 87 7***************99************************************97 PP
2	Wus_type_Homeobox	119.2	1.8e-38	28	89	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq SMil_00015950-RA_Salv 28 TRWNPTQEQIGILEMLYQGGMRTPNAHQIEQITAQLANYGKIEGKNVFYWFQNHKARERQKQ 89 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.961	23	88	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.33E-12	25	92	IPR009057	Homeodomain-like
SMART	SM00389	7.2E-6	25	92	IPR001356	Homeobox domain
Pfam	PF00046	9.2E-20	28	87	IPR001356	Homeobox domain
CDD	cd00086	2.36E-5	28	89	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-8	29	87	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
LKTKTAMLNL GVRVPIWMQA EAPAPGGTRW NPTQEQIGIL EMLYQGGMRT PNAHQIEQIT 60 AQLANYGKIE GKNVFYWFQN HKARERQKQK RGLSPRQPPP SPFATGEDLD CSAQKRKCRS 120 WAFDQVDYRI L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024166844.1	3e-49	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	8e-40	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A4D8YC15	2e-51	A0A4D8YC15_SALSN; Uncharacterized protein
STRING	XP_008378020.1	4e-46	(Malus domestica)
STRING	XP_004291086.1	2e-46	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6186	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	3e-42	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]