PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00015954-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 192aa MW: 22100.6 Da PI: 5.2829

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015954-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	117.1	1.8e-36	8	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ e ++wyf+s+r + ++r+ sgyW+ g SMil_00015954-RA_Salv 8 MPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLHGKAMCEGNKWYFYSRRTT-------QSRVGGSGYWQPIGV 87 79***********************999.99**********977677899**9865.......679999***** PP NAM 89 dkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 +++++s +g+ vg+kk +fy g + ++g+kt+W+mheyrl SMil_00015954-RA_Salv 88 EEAIYS-GGQRVGMKKCNAFYVGqQPSQGVKTNWIMHEYRL 127 **.99********88355689********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-49	5	157	IPR003441	NAC domain
PROSITE profile	PS51005	45.307	8	158	IPR003441	NAC domain
Pfam	PF02365	2.6E-22	9	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MGDNNLNMPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLHGKAMCE 60 GNKWYFYSRR TTQSRVGGSG YWQPIGVEEA IYSGGQRVGM KKCNAFYVGQ QPSQGVKTNW 120 IMHEYRLSDS TSSNRSSSRR RSSKIDYSKW VVCRVYERNC DSDDDDGTQL SCLDEVFLSL 180 DDLDEISLPN YS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	4	162	13	169	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	4	162	13	169	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	4	162	13	169	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	4	162	13	169	NO APICAL MERISTEM PROTEIN
3swm_A	3e-45	4	162	16	172	NAC domain-containing protein 19
3swm_B	3e-45	4	162	16	172	NAC domain-containing protein 19
3swm_C	3e-45	4	162	16	172	NAC domain-containing protein 19
3swm_D	3e-45	4	162	16	172	NAC domain-containing protein 19
3swp_A	3e-45	4	162	16	172	NAC domain-containing protein 19
3swp_B	3e-45	4	162	16	172	NAC domain-containing protein 19
3swp_C	3e-45	4	162	16	172	NAC domain-containing protein 19
3swp_D	3e-45	4	162	16	172	NAC domain-containing protein 19
4dul_A	2e-45	4	162	13	169	NAC domain-containing protein 19
4dul_B	2e-45	4	162	13	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106335.1	1e-101	NAC domain-containing protein 104-like
Refseq	XP_027159802.1	1e-101	NAC domain-containing protein 104
Swissprot	Q8GWK6	9e-79	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A068TMB6	1e-100	A0A068TMB6_COFCA; Uncharacterized protein
STRING	XP_009622295.1	7e-97	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-66	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]