PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00016080-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 110aa MW: 11566.9 Da PI: 6.7682

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00016080-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	9.9e-05	36	58	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C++ Fs+ L H r+H SMil_00016080-RA_Salv 36 HQCPFCDRIFSSGQALGGHKRSH 58 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.3E-4	31	58	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.15E-6	32	59	No hit	No description
Pfam	PF13912	1.3E-9	36	58	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.411	36	58	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	38	58	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MQQALPLVSG ARRPQGQPQE DQGRAAAGTP SGKKIHQCPF CDRIFSSGQA LGGHKRSHFI 60 GAAAIERNSS AISQVLSIDL NLPAPLDDDE GSQIAISAVS DAEFVCNVKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090203.1	1e-28	zinc finger protein ZAT4
Swissprot	Q9M202	1e-15	ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBL	A0A4D8Y5H9	1e-43	A0A4D8Y5H9_SALSN; Uncharacterized protein
STRING	Migut.B01588.1.p	5e-28	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1095	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	5e-18	C2H2-like zinc finger protein